Biology 41 - Principles of Animal Biology
Evolution - Life on Earth
     When one first starts to study biology one is often not aware of the fact that the world has not always been the way it is at the moment. To study the changes in life forms one often have to turn to what is referred to as "deep time" or geological time. This time scale looks at changes that occur over millions and millions of years. As an example we can turn to the today highly successful group referred to as the flowering plants. If you went back in time to a period about 140 million years ago you would find a world lacking in the plants that now dominate the terrestrial world. At that time you would find no flowers, no grasses and none of the familiar trees such as oak or maple. Most species that have evolved on our planet are extinct. After finishing this section of the course  you will have an appreciation and an overview of how some of the major groups of organisms evolved on the planet over the last four billion years. Focus on your ability to outline the significance of major evolutionary events as well as when they occurred in Earth's history.

    1. Make a timeline which indicates the major events of the history of life on our planet. Outline major events that occurred in each geological period.
    2. When did the Earth form? The Solar system? Our universe?
    3. Describe the conditions on the early earth about 4.5 billion years ago.
    4. Explain the process of chemical evolution. How does it differ from the concept of biological evolution?
    5. When does the first life appear in the fossil record? What kind of organism were the first life forms on Earth?
    6. What kind of life form dominated in the seas of the early earth for almost two billion years? Was there any life on land during this time?
    7. Why was the evolution of photosynthesis so important?
    8. How was the formation of ozone in the upper atmosphere important for the evolutionary events that followed?
    9. When did the first animals appear in the fossil record? What kind of animals were they?
    10. What is the importance of the Burgess shale for our understanding of animal evolution?
    11. Discuss the reasons for why first plants, and later animals, evolved on land (both terrestrial plants and animals descended from marine ancestors)?
    12. What is thought to be the cause of the Cretaceous mass extinction which wiped out the lineage of dinosaurs?
    13. Mammals went through a major adaptive radiation beginning about 65 million years ago. The fossil record indicates a mammalian origin of about 225 million years. What took them so long?
    14. Briefly describe the evolution of primates with a focus on the hominids.
    15. What kind of perspective did you gain from the "calendar year" analogy?

Lecture Outline/Notes:
NOTE: When you approach this section of the course you should focus on the timeline approach from lecture, i.e. you should know the major sequence of events as described by The Geological Time Scale  . This timeline link could also be somewhat helpful in terms of aiding your memory. Below I have added additional "meat" to this timeline in aspects mainly related to the evolution of the vertebrates. I have done so to help you gain perspective for what will come later on this semester. I will not test you on those aspects on the first exam. Remember, focus on understanding the timeline/geological timeline as you approach this section for the first exam. It is also quite worthwhile to do the web activity below as well as to take a closer peek at the Cambrian section. 
Time Line: As you study this section of the class you should produce a timeline that shows the major events in the history of life on our planet. The lecture, your notes as well as this page will help you to do so. Please complete the web activity "Deep Time". It is an outstanding resource
Plate Tectonics: Try to notice the changes that occur in terms of the geography of the planet due to plate tectonics. Where were the modern continents located at different times in the history of the planet? Did their movement affect the evolution of different species? How?
Web Activity
Web Activity: Deep Time 
Origins: Brief perspective from an astronomer's point of view
The Big Bang Theory (~13 billions of years ago)
Formation of the solar system about 6 billion years ago.
Formation of the Earth about 4.7 billion years ago (bya)
Early Earth: extreme conditions, high volcanic activity, earthquakes; extremely hot; cooling process; water condensed; seas formed.
Atmospheric Composition: water vapor, hydrogen, nitrogen, methane, carbon dioxide. High electrical activity in the atmosphere (lightning).
Chemical Evolution: Miller’s experiment in the 1950’s: simulated early conditions on Earth and generated simple organic molecules such as sugars, amino acids and nucleotides from inorganic components. This process is referred to as chemical evolution. The Miller experiment indicates that these conditions could have led to the formation of the molecules of life (proteins; DNA; carbohydrates, etc.).

Origin of Life:  Other experiments have led to the formation of nucleic acids as well as primitive cell membranes. It is thought that the first cell (or cells) evolved under these extreme conditions on the early earth. Nobody has yet produced a self-replicating cell under laboratory conditions.
It appears as if all living organisms that exist today are descendants of these first cells that evolved about 3.8 billion years ago. One of the strongest pieces of evidence for our common ancestry is that virtually all cells share the genetic code. The cellular machinery is extremely similar in all cells. E.g. an amoeba (which is unicellular) or a cell from an earthworm or a cell from a beetle or a cell from a zebra all share similar cellular and metabolic processes in terms of how their cells function. Those cells express their DNA in a very similar fashion.

Lecture: The Spark of Life
[video 50 min - Realplayer]
First Life forms: prokaryotic cells, bacteria, about 3.5-3.8 bya as shown by microscopic fossil in strata from that time period. Early cells lived on pre-formed organic molecules in the oceans. They were heterotrophs. Bacterial species were the only life forms in the oceans of the planet for the next two billion years. No life existed on land.
Photosynthesis: the first photosynthetic bacteria appeared about 2.5 - 2.8 bya. These lifeforms could use light energy to chemically combine carbon dioxide molecules from the atmosphere into simple sugars. Thereby these bacteria became largely independent from the need to access organic molecules from the environment around them as a food source. The process of photosynthesis became the basis for nearly all ecosystems across our planet (the producers). Some of these bacteria started to produce oxygen as a byproduct of photosynthesis. Oxygen slowly started to accumulate in the atmosphere (0% to today's 20.9%). The level of oxygen in the atmosphere reached today's level more than 500 million years ago during the Cambrian period. Oxygen became a very important component (actually as a final electron acceptor) in the metabolic pathway referred to as cellular respiration. The presence of oxygen also led to the formation of ozone (O3) that blocks radiation from the sun in the upper atmosphere. The ozone layer later made life possible on land by shielding the radiation (ultraviolet light) for land organisms. The photosynthetic bacteria were of course also the origin of the photosynthetic process later used by the land plants.

First Eukaryotic Cells: appeared about 1.8 bya. These cells are traditionally characterized by their larger size and the presence of organelles such as a nucleus, mitochondria and chloroplasts. The last two organelles have a bacterial origin (endosymbiotic theory).
 

First Animals: Fossils from about 600 -700 mya demonstrate the first presence of animals. The Cambrian period (570-510 mya) is known for the rapid evolutionary "explosion" of different animal body plans. The Burgess Shale in Canada is one of the locations that harbor an amazing array of fossils. These early animals were soft-bodied invertebrates (animals without a backbone). The fossil record indicates a great variety of different body plans. A very large adaptive radiation of marine organisms occurred about 500 mya. The evolution of fast-moving predators led to the evolution of animals that protected themselves with shells or by burrowing into soft sediment. 
Today the greatest diversity of animals (in terms of major types of animals (phyla)  - not the number of species) is found in the oceans indicating the evolutionary origin of the animal kingdom. 
Interactions (such as competition and predation) between different animals species as well as their environment led to a variety of different body plans and adaptations. All animals that exist today can trace their ancestral origins to the animal species that evolved during the Cambrian period.
The Burgess Shale in British Columbia includes a high diversity of early animals from the Cambrian period.
The Cambrian Explosion 
[video 24 sec - Realplayer]
Listen to a discussion about the Cambrian explosion and the origin of animal body plans
NPR: The Origin of Animal Body Plans
First Vertebrates The earliest vertebrates (animals with a backbone) possibly evolved at the end of the Cambrian period (570-505 mya). These animals were jawless fishes. Somewhat later some groups of fishes evolved a jaw (the Silurian period 439-409 mya). The evolution of the jaw led to a major adaptive radiation among the fishes. Why do you think that the jaw was (and still is) such a useful characteristic? Do all vertebrates have a jaw? Why or why not? The fishes are still the most diverse group of the vertebrates and can be found in any marine or freshwater habitat on the planet. There are many unusual fish species that are interesting to study from an evolutionary perspective. Interestingly the fresh water environment has much higher diversity of fish species that the marine environment. Why could that be?

First Land Plants: The first plants colonized land during the Ordovician period (510-440 mya). These early plant communities were mostly low profile moss-like organisms with algal ancestors. Advantages on land: plenty of light, no plant eating animals. Disadvantages: desiccation, how to get nutrients and water, overheating, reproduction.  Remember our discussion on how evolution and natural selection led to organisms better and better adapted to a life on land. The better adapted (initially) the more likely to escape animals feeding on you. Ferns (380 mya), Gymnosperms [i.e. seed plants such as conifers and relatives] (360 mya) and Angiosperms [flowering plants] (130 mya) evolved. Each group was distinctly better adapted to the harsh life on land as well as the lack of water. There is an overall trend in the evolution of plants that continuously makes it possible to survive with less water. The plant kingdom is very diverse so today one can see an amazing array of adaptations to all the different biomes on our planet. Some plants survive in the harshest desert while others are floating plants found in fresh water habitats.

First Land Invertebrates: ~400 mya (Silurian period 440-409 mya). These species followed the plants (=food). The better adapted to land conditions the more food is available and the reproductive success increases. These first land animals belonged to the Arthropods (specifically these were millipedes, centipedes and scorpions). The insects somewhat later (Devonian period 409-354 mya) diversified into an enormous array of different species and today dominate the biodiversity on the planet. Today 25% of all animal species are beetles. About 75% of all animal species are insects. Their success in terms of their biodiversity in the modern world is tremendous.

First Land Vertebrates (The Tetrapods): These animals can trace their ancestry to fishes. Some of the modern (extant) fish species show traits that must have been important in the ancestor to the amphibians: the lung fish with a lung able to breathe air, and the Coelecanth with a fleshy fin containing bones similar in arrangement to limbs in land vertebrates. The coelecanth was thought to be extinct so its discovery was a thrill to many biologists. The combination of these two traits in one group of fishes led to the evolution of the first Amphibians. Acanthostega is an example of these early amphibians.
Acanthostega gunnari - one of the first vertebrates with limbs
The Evolution of Limbs
[video 4 min - Realplayer]
Amphibians: Moist glandular skin, lay eggs in water (cannot dry out); life cycle (egg - tadpole - adult). Some early amphibians became very large. (today: frogs, salamanders, caecilians)
Reptiles: amphibian ancestors; better adapted to a life on land; the major problems to solve are desiccation and the ability to reproduce without water. Reptiles evolved a scaly keratinized skin; the amniotic egg (egg w/ shell and nutrients for the embryo that could be laid on land; the embryo is surrounded by a membrane called the amnion); internal fertilization (i.e. copulation to protect the gametes); and efficient kidneys to conserve water. The dinosaurs was a group of reptiles that became very dominant for about 200 my (~250 mya to 65 mya). The dinosaurs went extinct in a major mass extinction 65 mya  (the Cretaceous extinction) caused by a meteor impact with the Earth. Today: alligators, crocodiles, lizards, snakes, turtles and tortoises are living representatives of the taxon. Elasmosaurus
Flying Bird Birds: a group derived from the reptiles (specifically the dinosaurs). Many biologists consider these organisms as being living descendants of the dinosaurs. Main characteristic is the feather made of keratin. Serves as a device for flying (lift) as well as insulation. Birds are endotherms, i.e. they maintain body temperature with their metabolism. Birds are highly adapted to a life in the air (even though some birds are flightless). The ancestry of birds relative to the reptiles is demonstrated by the presence of the amniotic egg and scaly legs. Intermediate fossils have been found (such as Archaeopteryx - a "reptile" fossil with feathers).
Mammals: another group with an origin from the reptiles (more specifically the therapsids). Characterized by fur (for insulation since mammals are endotherms just like birds) as well as mammary glands to feed the young. Mammary glands are modified sweat glands. Mammals appeared about 225 mya in the fossil record. Early mammals were very small (like a shrew), and are thought to have been nocturnal tree-living animals. The group did not expand until the dinosaurs went extinct 65 mya. The mammals went through a major adaptive radiation leading to the mammals we see on our planet today. Of special interest are the primates with their origin from tree living mammals about 40 mya Mammals
Web Activity
Web Activity: Human Origins 
Human Origins: Fossils from eastern Africa from about 3.5 mya show primates with very human like features - Australopithecus - the famous “Lucy” fossil and other members of her kind. We are going to take a much closer look at the human ancestors later. Humans (Homo sapiens) as we look today did not appear until about 200,000 years ago.. Please complete the web activity "Human Origins". 
Our recorded history only covers a time span of 10,000 years - an extremely small fraction of the evolutionary time covered in this lecture. The last minute of our imaginary calendar year!



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Page created by: Peter Svensson
Updated: September 14,  2004